Friday Paper Post – Oct. 25th supplement

Again sorry I fell off schedule with the weekly posts.  This is the second post for today. After this we should be caught up for next week. Here are a few more papers!

1) SHANK3 overexpression causes manic-like behaviour with unique pharmacogenetic properties Kihoon Han, J. Lloyd Holder Jr, Christian P. Schaaf, Hui Lu, Hongmei Chen, Hyojin Kang, Jianrong Tang, Zhenyu Wu, Shuang Hao, Sau Wai Cheung, Peng Yu, Hao Sun, Amy M. Breman, Ankita Patel, Hui-Chen Lu & Huda Y. Zoghbi ; Nature 2013 (link)

2) Light-guiding hydrogels for cell-based sensing and optogenetic synthesis in vivo Myunghwan Choi, Jin Woo Choi, Seonghoon Kim, Sedat Nizamoglu, Sei Kwang Hahn & Seok Hyun Yun ; Nature Photonics (link)

3) Modelling and analysis of local field potentials for studying the function of cortical circuits Gaute T. Einevoll, Christoph Kayser, Nikos K. Logothetis and Stefano Panzeri ; Nature Reviews Neuroscience 2013 (link)

4) Temporal Jitter of the BOLD Signal Reveals a Reliable Initial Dip and Improved Spatial Resolution Masataka Watanabe, Andreas Bartels Jakob H. Macke, Yusuke Murayama, and Nikos K. Logothetis; Current Biology 2013 (link)

5) Distinct Roles of the Cortical Layers of Area V1 in Figure-Ground Segregation Matthew W. Self, Timo van Kerkoerle, Hans Super, and Pieter R. Roelfsema ; Current Biology 2013 (link)

6) Spatiotemporal Structure of REM Sleep Twitching Reveals Developmental Origins of Motor Synergies Mark S. Blumberg, Cassandra M. Coleman, Ashlynn I. Gerth, and Bob McMurray ; Current Biology 2013 (link)

7) High-throughput imaging of neuronal activity in Caenorhabditis elegans Johannes Larsch, Donovan Ventimigli, Cornelia I. Bargmann, and Dirk R. Albrecht ; PNAS 2013 (link)

8) Dynamics of dendritic spines in the mouse auditory cortex during memory formation and memory recall Kaja Ewa Moczulska, Juliane Tinter-Thiede, Manuel Peter, Lyubov Ushakova, Tanja Wernle, Brice Bathellier, and Simon Rumpel ; PNAS 2013 (link)

9) Reduced choice-related activity and correlated noise accompany perceptual deficits following unilateral vestibular lesion Sheng Liua, J. David Dickmana, Shawn D. Newlandsb, Gregory C. DeAngelisc, and Dora E. Angelaki ; PNAS 2013 (link)

10) Common medial frontal mechanisms of adaptive control in humans and rodents Nandakumar S Narayanan, James F Cavanagh, Michael J Frank & Mark Laubach ; Nature Neuroscience 2013 (link)

11) Adaptation in sound localization: from GABAB receptor–mediated synaptic modulation to perception Annette Stange, Michael H Myoga, Andrea Lingner, Marc C Ford, Olga Alexandrova, Felix Felmy, Michael Pecka, Ida Siveke & Benedikt Grothe ; Nature Neuroscience 2013 (link)

12) Integration of the olfactory code across dendritic claws of single mushroom body neurons Eyal Gruntman & Glenn C Turner ; Nature Neuroscience 2013 (link)

13) Network state-dependent inhibition of identified hippocampal CA3 axo-axonic cells in vivo Tim J Viney, Balint Lasztoczi, Linda Katona, Michael G Crump, John J Tukker, Thomas Klausberger & Peter Somogyi ; Nature Neuroscience 2013 (link)

14) Parallel, multi-stage processing of colors, faces and shapes in macaque inferior temporal cortex Rosa Lafer-Sousa & Bevil R Conway ; Nature Neuroscience 2013 (link)

15) Odor Discrimination Requires Proper Olfactory Fast Oscillations in Awake Mice Gabriel Lepousez and Pierre-Marie Lledo ; Neuron 2013 (link)

16) Chronic Cellular Imaging of Entire Cortical Columns in Awake Mice Using Microprisms Mark L. Andermann, Nathan B. Gilfoy, Glenn J. Goldey, Robert N.S. Sachdev, Markus Wolfel, David A. McCormick, R. Clay Reid, and Michael J. Levene  ; Neuron 2013 (link)

• this is kind of too awesome for words…so feast your eyes on some of figure 1. Imaging of entire cortical column..the 2-photon equivalent of a laminar probe?! Awesome!!

 

Friday Paper Post – Oct. 25th

My ability to post on time over the last few weeks has been much like this dog’s lighting fast reflexes… not very stellar…

Unfortunately, just because I don’t have time to post doesn’t mean the papers stop piling up. So I’ll probably need to play catch up with a really big list or two posts. Even though this will be a lot, as always I recommend at least scanning though the entire list because there are some goodies!

Papers away!

1) Sleep Drives Metabolite Clearance from the Adult Brain Lulu Xie, Hongyi Kang, Qiwu Xu, Michael J. Chen, Yonghong Liao, Meenakshisundaram Thiyagarajan, John O’Donnell, Daniel J. Christensen, Charles Nicholson, Jeffrey J. Iliff, Takahiro Takano, Rashid Deane, Maiken Nedergaard ; Science 2013 (link)

2) Cortical interneurons that specialize in disinhibitory control Hyun-Jae Pi, Balazs Hangya, Duda Kvitsiani, Joshua I. Sanders, Z. Josh Huang & Adam Kepecs ; Nature 2013 (link)

3) Feature detection and orientation tuning in the Drosophila central complex Johannes D. Seelig & Vivek Jayaraman ; Nature 2013 (link)

4) Membrane potential correlates of sensory perception in mouse barrel cortex Shankar Sachidhanandam, Varun Sreenivasan, Alexandros Kyriakatos, Yves Kremer & Carl C H Petersen ; Nature Neuroscience 2013 (link)

5) Origin and effect of phototransduction noise in primate cone photoreceptors Juan M Angueyra & Fred Rieke  ; Nature Neuroscience 2013 (link)

6) A disinhibitory circuit mediates motor integration in the somatosensory cortex Soohyun Lee, Illya Kruglikov, Z Josh Huang, Gord Fishell & Bernardo Rudy  ; Nature Neuroscience 2013 (link)

7) Dual origins of functionally distinct O-LM interneurons revealed by differential 5-HT3AR expression Ramesh Chittajallu, Michael T Craig, Ashley McFarland, Xiaoqing Yuan, Scott Gerfen, Ludovic Tricoire, Brian Erkkila, Sean C Barron, Carla M Lopez, Barry J Liang, Brian W Jeffries, Kenneth A Pelkey & Chris J McBain  ; Nature Neuroscience 2013 (link)

8) Subcortical origins of human and monkey neocortical interneurons Tong Ma, Congmin Wang, Lei Wang, Xing Zhou, Miao Tian, Qiangqiang Zhang, Yue Zhang, Jiwen Li, Zhidong Liu, Yuqun Cai, Fang Liu, Yan You, Chao Chen, Kenneth Campbell, Hongjun Song, Lan Ma, John L Rubenstein & Zhengang Yang  ; Nature Neuroscience 2013 (link)

9) Non-epithelial stem cells and cortical interneuron production in the human ganglionic eminences David V Hansen, Jan H Lui, Pierre Flandin, Kazuaki Yoshikawa, John L Rubenstein, Arturo Alvarez-Buylla & Arnold R Kriegstein  ; Nature Neuroscience 2013 (link)

10) Circuit reactivation dynamically regulates synaptic plasticity in neocortex Peter B. Kruskal, Lucy Li & Jason N. MacLean ; Nature Communications 2013 (link)

11) Neuroscience: Through the eye of a mouse by Monya Baker ; Nature 2013 (link)

• this is a fun article covering some of the same scandal in the neuroscience community that was touched on by Tony Movshon at COSYNE this year.

12) The Challenge of Connecting the Dots in the B.R.A.I.N. Anna Devor, Peter A. Bandettini, David A. Boas, James M. Bower, Richard B. Buxton, Lawrence B. Cohen, Anders M. Dale, Gaute T. Einevoll, Peter T. Fox, Maria Angela Franceschini, Karl J. Friston, James G. Fujimoto, Mark A. Geyer, Joel H. Greenberg, Eric Halgren, Matti S. Hamalainen, Fritjof Helmchen, Bradley T. Hyman, Alan Jasanoff, Terry L. Jernigan, Lewis L. Judd, Seong-Gi Kim, David Kleinfeld, Nancy J. Kopell, Marta Kutas, Kenneth K. Kwong, Matthew E. Larkum, Eng H. Lo, Pierre J. Magistretti, Joseph B. Mandeville, Eliezer Masliah, Partha P. Mitra, William C. Mobley, Michael A. Moskowitz, Axel Nimmerjahn, John H. Reynolds, Bruce R. Rosen, Brian M. Salzberg, Chris B. Schaffer, Gabriel A. Silva, Peter T.C. So, Nicholas C. Spitzer, Roger B. Tootell, David C. Van Essen, Wim Vanduffel, Sergei A. Vinogradov, Lawrence L. Wald, Lihong V. Wang, Bruno Weber, and Arjun G. Yodh ; Neuron 2013 (link)

13) Impaired Hippocampal Ripple-Associated Replay in a Mouse Model of Schizophrenia Junghyup Suh, David J. Foster, Heydar Davoudi, Matthew A. Wilson, and Susumu Tonegawa ; Neuron 2013 (link)

14) Establishment of Neurovascular Congruency in the Mouse Whisker System by an Independent Patterning Mechanism Won-Jong Oh and Chenghua Gu ; Neuron 2013 (link)

15) Subthreshold Mechanisms Underlying State-Dependent Modulation of Visual Responses Corbett Bennett, Sergio Arroyo, and Shaul Hestrin ; Neuron 2013 (link)

16) Firing Rate Homeostasis in Visual Cortex of Freely Behaving Rodents Keith B. Hengen, Mary E. Lambo, Stephen D. Van Hooser, Donald B. Katz, and Gina G. Turrigiano ; Neuron 2013 (link)

17) Synaptic Scaling and Homeostatic Plasticity in the Mouse Visual Cortex In Vivo Tara Keck, Georg B. Keller, R. Irene Jacobsen, Ulf T. Eysel, Tobias Bonhoeffer, and Mark Hubener ; Neuron 2013 (link)

18) How to Pick a Graduate Advisor Ben A. Barres ; Neuron 2013 (link)

19) Mice infer probabilistic models for timing Yi Li and Joshua Tate Dudman ; PNAS 2013 (link)

20) Restoring the sense of touch with a prosthetic hand through a brain interface Gregg A. Tabot, John F. Dammann, Joshua A. Berg, Francesco V. Tenore, Jessica L. Boback, R. Jacob Vogelstein, and Sliman J. Bensmaia  ; PNAS 2013 (link)

21) Cellular organization of cortical barrel columns is whisker-specific Hanno S. Meyer, Robert Egger, Jason M. Guest, Rita Foerster, Stefan Reissl, and Marcel Oberlaender  ; PNAS 2013 (link)

22) Optogenetic-mediated increases in in vivo spontaneous activity disrupt pool-specific but not dorsal-ventral motoneuron pathfinding Ksenia V. Kastanenka and Lynn T. Landmesser  ; PNAS 2013 (link)

23) Network model of top-down influences on local gain and contextual interactions in visual cortex Valentin Piëch, Wu Li, George N. Reeke, and Charles D. Gilbert  ; PNAS 2013 (link)

24) Skill learning strengthens cortical representations of motor sequences Tobias Wiestler, Jörn Diedrichsen ; eLife 2013 (link)

25) Relationship between the Local Structure of Orientation Map and the Strength of Orientation Tuning of Neurons in Monkey V1: A 2-Photon Calcium Imaging Study Koji Ikezoe, Yoshiya Mori, Kazuo Kitamura, Hiroshi Tamura, and Ichiro Fujita ; JNeuroscience 2013 (link)

26) Diverse Suppressive Influences in Area MT and Selectivity to Complex Motion Features Yuwei Cui, Liu D. Liu, Farhan A. Khawaja, Christopher C. Pack, and Daniel A. Butts ; JNeuroscience 2013 (link)

27) Large-Scale Brain Networks in the Awake, Truly Resting Marmoset Monkey Annabelle M. Belcher, Cecil C. Yen, Haley Stepp, Hong Gu, Hanbing Lu, Yihong Yang, Afonso C. Silva, and Elliot A. Stein ; JNeuroscience 2013 (link)

• in part due to the push for access to the genetic toolbox in primate vision research (see the Nature article above @11), I would keep an eye out for the marmoset being used more and more in systems neuroscience research

28) Visual Response Properties of V1 Neurons Projecting to V2 in Macaque Yasmine El-Shamayleh, Romesh D. Kumbhani, Neel T. Dhruv, and J. Anthony Movshon ; JNeuroscience 2013 (link)

• this paper sticks with the theme of monkey vision and Tony Movshon

29) Integration of Direction Cues Is Invariant to the Temporal Gap between Them Roozbeh Kiani, Anne K. Churchland, and Michael N. Shadlen ; JNeuroscience 2013 (link)

30) Structural Basis of Cerebellar Microcircuits in the Rat Nadia L. Cerminara, Hanako Aoki, Michaela Loft, Izumi Sugihara, and Richard Apps ; JNeuroscience 2013 (link)

31) Optic Flow Stimuli Update Anterodorsal Thalamus Head Direction Neuronal Activity in Rats Angelo Arleo, Cyril De ́jean, Pierre Allegraud, Mehdi Khamassi, Michael B. Zugaro, and Sidney I. Wiener ; JNeuroscience 2013 (link)

32) Dissociable Neural Mechanisms for Goal-Directed Versus Incidental Memory Reactivation Brice A. Kuhl, Marcia K. Johnson, and Marvin M. Chun ; JNeuroscience 2013 (link)

33) Speed-Dependent Contribution of Callosal Pathways to Ipsilateral Movements Toshiki Tazoe and Monica A. Perez ; JNeuroscience 2013 (link)

34) Rapid Functional Reorganization in Human Cortex Following Neural Perturbation Theodore P. Zanto, James Z. Chadick, Gabriela Satris, and Adam Gazzaley ; JNeuroscience 2013 (link)

35) Saccade Modulation by Optical and Electrical Stimulation in the Macaque Frontal Eye Field Shay Ohayon, Piercesare Grimaldi, Nicole Schweers, and Doris Y. Tsao ; JNeuroscience 2013 (link)

• and keeping with the theme of new tools in non-rodent models, Doris Tsao’s lab provides some great insight into moving optogenetics into the macaque system.

36) Observing motor learning produces somatosensory change Nicolò F. Bernardi, Mohammad Darainy, Emanuela Bricolo, and David J. Ostry ; JNeurophys 2013 (link)

37) Self-tuning of inhibition by endocannabinoids shapes spike-time precision in CA1 pyramidal neurons Franck Dubruc, David Dupret, and Olivier Caillard ; JNeurophys 2013 (link)

 

 

Friday Paper List – Posted Saturday October 5th

I keep missing the deadline to have these posts up by Friday. However, I will continue to be stubborn and call them “Friday Paper List” posts.

If you didn’t read about M-Blocks this week, check out this article here or just skip straight to the video about them here.

Also I wanted to point out this video from AsapSCIENCE right here. If you have never seen any of their videos then you are missing out. As a huge optogenetics fanboy, I’ve watched more than my fair share of videos describing optogenetics. I like this one though because I found it unique and it provides a fresh take on communicating how and what optogenetics does in a way that is abstract and easy to follow.

Finally for those of you working on writing your own papers, I think the message from this blog post is spot on and gives great advice.

A few more papers are added to the pile below:

1) Programmable chemical controllers made from DNA Yuan-Jyue Chen, Neil Dalchau, Niranjan Srinivas, Andrew Phillips, Luca Cardelli, David Soloveichik and Georg Seelig ; Nature Nanotechnology 2013 (link)

• not directly neuroscience related, but still pretty darn cool

2) Computation of linear acceleration through an internal model in the macaque cerebellum Jean Laurens, Hui Meng & Dora E Angelaki ; Nature Neuroscience 2013 (link)

3) Tracing Inputs to Inhibitory or Excitatory Neurons of Mouse and Cat Visual Cortex with a Targeted Rabies Virus Yong-Jun Liu, Markus U. Ehrengruber, Moritz Negwer, Han-Juan Shao, Ali H. Cetin, and David C. Lyon ; Current Biology 2013  (link)

4) A Shared Representation of the Space Near Oneself and Others in the Human Premotor Cortex Claudio Brozzoli, Giovanni Gentile, Loretxu Bergouignan, and H. Henrik Ehrsson ; Current Biology 2013  (link)

5) The Structure of Cognition: Attentional Episodes in Mind and Brain John Duncan ; Neuron 2013 (link)

6) Plasticity of Recurrent L2/3 Inhibition and Gamma Oscillations by Whisker Experience Yu R. Shao, Brian R. Isett, Toshio Miyashita, Jason Chung, Olivia Pourzia, Robert J. Gasperini, and Daniel E. Feldman ; Neuron 2013 (link)

7) Synthesizing cognition in neuromorphic electronic systems Emre Neftci, Jonathan Binas, Ueli Rutishauser, Elisabetta Chicc, Giacomo Indiveri, and Rodney J. Douglas ; PNAS 2013 (link)

8) Spatial and temporal codes mediate the tactile perception of natural textures Alison I. Weber, Hannes P. Saal, Justin D. Lieber, Ju-Wen Cheng, Louise R. Manfredi, John F. Dammann III, and Sliman J. Bensmaia ; PNAS 2013 (link)

9) Receptive field focus of visual area V4 neurons determines responses to illusory surfaces Michele A. Cox, Michael C. Schmid, Andrew J. Peters, Richard C. Saunders, David A. Leopold, and Alexander Maier ; PNAS 2013 (link)

10) Oscillatory Phase Dynamics in Neural Entrainment Underpin Illusory Percepts of Time Bjorn Herrmann, Molly J. Henry, Maren Grigutsch, and Jonas Obleser ; J Neuroscience 2013 (link)

11) Role of Medial Prefrontal Cortex Serotonin 2A Receptors in the Control of Retrieval of Recognition Memory in Rats Pedro Bekinschtein, Maria Constanza Renner, Maria Carolina Gonzalez, and Noelia Weisstaub ; J Neuroscience 2013 (link)

12) Mechanisms for Stable, Robust, and Adaptive Development of Orientation Maps in the Primary Visual Cortex Jean-Luc R. Stevens, Judith S. Law, Ján Antolík, and James A. Bednar ; J Neuroscience 2013 (link)

13) Superficially Projecting Principal Neurons in Layer V of Medial Entorhinal Cortex in the Rat Receive Excitatory Retrosplenial Input Rafał Czajkowski, Jørgen Sugar, Sheng-Jia Zhang, Jonathan J. Couey, Jing Ye, and Menno P. Witter ; J Neuroscience 2013 (link)

14) Neuronal correlates of tactile speed in primary somatosensory cortex Alexandra Dépeault, El-Mehdi Meftah, and C. Elaine Chapman ; J Neurophys 2013 (link)

15) A Barrel-Related Interneuron in Layer 4 of Rat Somatosensory Cortex with a High Intrabarrel Connectivity Christian Koelbl, Moritz Helmstaedter, Joachim Lübke and Dirk Feldmeyer ; Cerebral Cortex 2013 (link)

16) The spatial representations acquired in CA3 by self-organizing recurrent connections Erika Cerasti and Alessandro Treves ; Frontiers in Cellular Neuroscience 2013 (link)

Special shout-outs go to Michele, Alex, David, Justin, and Sliman for publishing great papers. You did it…TOUCHDOWN!!! Congrats!